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Expert dPCR Testing Services for Clinical Trials
Digital PCR / ddPCR Development

Expert dPCR Testing Services for Clinical Trials

CLIA-Certified Digital PCR Service for Bioanalytical Excellence

Overview

Digital polymerase chain reaction eliminates the variability inherent in quantitative PCR standard curves by partitioning each PCR sample into thousands of independent reactions.

After endpoint PCR amplification and endpoint measurement, Poisson statistical analysis converts positive reaction counts into precise quantification of target nucleic acid molecules — no reference sample required.

For sponsors pursuing gene and cell therapy approvals, droplet digital PCR (dPCR) and related dPCR platforms provide the precise quantification regulators expect for vector titer, transgene persistence, and biodistribution endpoints.

Why dPCR

Absolute quantification, rare-target sensitivity, and matrix tolerance for regulated bioanalysis.

From IND through BLA.

Why It Matters

Why dPCR Matters for Clinical Trial Success

This approach delivers significant benefits for regulated bioanalysis — from absolute quantification through ultra-rare target detection.

Absolute Quantification

Without calibration curves — eliminating the need for relative quantification methods, reducing inter-assay variability, and simplifying method transfer between laboratories.

Rare Mutation Detection

Approaching 0.001% MAF under optimized conditions with sufficient input DNA, supporting earlier identification of resistance mutations and minimal residual disease monitoring. Achievable sensitivity depends on partition number, input DNA, and assay design.

Wide Dynamic Range

Spanning four or more orders of magnitude — supporting gene therapy vector quantification from manufacturing through biodistribution.

Inhibitor Tolerance

Reliable results across challenging matrices including FFPE tissue, cell-free DNA, and complex clinical specimens.

High Precision

CVs typically at or below 10% mid-range copy numbers across validated concentration ranges, supporting ICH M10 validation requirements.

Hyperwelling for Ultra-Rare Targets

A specialized partitioning approach enabling reliable detection of one target in a million molecules — critical for HIV reservoir quantification, MRD monitoring, and ultra-low-level biodistribution.

Tunable Sequence Tolerance

Because dPCR relies on PCR completion rather than real-time fluorescence, assays can be designed to accommodate sequence variation at primer/probe positions — particularly valuable for HIV and other RNA viruses.

Capabilities

Accelevir's dPCR Services Capabilities

Our digital PCR system supports the full spectrum of bioanalytical applications for clinical research, a broad range from pathogen quantification to rare sequence detection in oncology liquid biopsy programs.

Full bioanalytical spectrum

01

Pathogen Detection & Quantification

Accelevir maintains validated digital PCR methods for HIV-1 clinical trials, including viral load monitoring, proviral DNA quantification, and transcription profiling assays. Our capabilities extend to:

02

Gene & Cell Therapy Applications

We support lentivirus vector quantification and AAV programs with validated dPCR applications including:

03

Gene Expression & microRNA Analysis

Our dPCR gene expression capabilities extend beyond mRNA quantification to include microRNA detection — a critical capability for biomarker discovery, immune cell profiling, and liquid biopsy programs where small non-coding RNAs serve as disease indicators.

04

Mutation Detection & Analysis

Our workflows to detect rare mutations leverage sample partitioning and amplification process optimization to achieve:

Pre-Designed Library

Pre-Designed Assay Library

Accelevir maintains a growing portfolio of validated and pre-designed dPCR assays available for immediate deployment, reducing development timelines for sponsors working with common targets and model systems.

Our pre-designed assay library includes:

For novel targets or custom applications, our experienced assay development team designs and validates bespoke solutions matched to your specific program requirements.

Top Applications

Top 8 Applications of Digital PCR for Clinical Trials

Across virology, oncology & gene therapy

01

Latent HIV-1 Provirus Quantification

Provirus quantification and intactness determination for reservoir-targeting therapeutic trials.

02

CAR-T and TCR-T Cell Persistence

Integrated vector copy number normalized to cellular reference genes, enabling calculation of vector copies per cell, verification of integrant integrity, and longitudinal monitoring of engineered cell populations throughout treatment.

03

Gene Therapy Biodistribution

Quantifying target DNA across tissues for regulatory safety packages.

04

Oncology Liquid Biopsy

Detecting circulating tumor DNA mutations for response monitoring.

05

Vaccine Research Support

Quantifying antigen transgene expression levels, vector biodistribution in gene-based vaccine programs, and immune cell activation markers in preclinical and clinical vaccine studies.

06

Residual DNA Quantification

Ensuring biologics meet purity specifications.

07

Copy Number Variation Analysis

Supporting rare disease biomarker programs.

08

Gene Expression Profiling

With small fold-change difference detection for biomarker discovery.

Process

Our dPCR Services Development and Testing Process

Four-Stage Workflow

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01

Step 1

Step 1

Assay Design and Optimization

We design custom primers and fluorescent probes optimized for your target sequences and intended sample matrices. Our scientists optimize reaction mix composition, partition number, and input nucleic acid requirements while developing multiplexing strategies for complex analyses requiring simultaneous detection of multiple nucleic acid targets.Our expertise extends to complex linkage assays and use of modified nucleic acids to tune primer/probe specificity for SNP discrimination or tolerance depending on the use case.

02
02

Step 2

Step 2

Analytical Performance Qualification

We can follow ICH M10, fit-for-purpose validation, CAP/CLIA, and help clients craft an analytical qualification or validation strategy that fits their needs. Validation that follows ICH M10 requirements includes:

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03

Step 3

Step 3

Scale-Up and Automation

High-throughput implementation integrates automated liquid handling with quality control systems supporting large clinical studies. Our workflows accommodate diverse sample types while maintaining the precision required for regulatory submissions.

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04

Step 4

Step 4

Regulatory Documentation and Support

While sometimes, fit-for-purpose validation is all that is needed, we can deliver comprehensive method validation packages aligned with FDA and EMA expectations, including:

Compliance

Regulatory Alignment and Compliance

Accelevir’s CLIA-certified and CAP-accredited laboratory operates under externally audited quality systems meeting the demands of clinical trial bioanalysis:

ICH M10 Compliance

Documented validation of accuracy, precision, sensitivity, specificity, and matrix effects.

GLP Adherence

For nonclinical biodistribution and toxicology support.

GCP Alignment

For clinical sample testing and reporting.

FDA-Ready Documentation

Supporting IND, BLA, and international submissions.

Our regulatory expertise extends to method transfer protocols ensuring consistent performance when transitioning validated dPCR assays to sponsor laboratories or manufacturing sites.
Success Stories

Client Success Stories

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— Senior executive at a global life sciences company

“Your assay development and refinement exemplifies the power of our platforms … by thoughtfully leveraging the unique precision, sensitivity, single template multiplexing, and linkage determination capabilities of digital PCR.”

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— Principal Investigator of multi-site T cell therapy clinical trial

“With your support of [our] therapeutic vaccine trial, we were able to quickly generate unbiased data with cutting-edge assays to evaluate the impact of a novel T cell-based therapeutic vaccine in a randomized clinical trial. Given our success working with your group, we have several planned studies testing novel interventions.”

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— Director of Study Operations at in vivo preclinical CRO

“As an in vivo CRO, we rely heavily on strong bioanalytical partners—and working with Accelevir has truly elevated the quality of our studies. They feel like an extension of our team, consistently delivering high-quality, reliable data quickly and giving our sponsors real confidence as they move their programs forward.”

FAQ

Frequently Asked Questions

What sample types can be analyzed with dPCR?

We validate digital PCR (dPCR) methods across blood (plasma, serum, PBMCs), fresh and frozen tissues, FFPE samples, and cell-free DNA. Each matrix requires optimized extraction and partitioning protocols to ensure reliable amplified target DNA detection.

How does dPCR vs qPCR compare for clinical trials?

While real-time PCR remains appropriate for high-abundance targets where standard-curve dependence is acceptable, digital PCR excels in several dimensions: absolute quantification without calibration curves, superior precision at low copy numbers, greater robustness to PCR inhibitors, and rare-event detection below 1% allele frequency. For regulatory submissions requiring inter-laboratory reproducibility and precise quantification, dPCR provides significant advantages regardless of target abundance.

What is the typical turnaround time for dPCR testing?

Standard validated assays on routine sample types — including plasma, serum, and blood — typically complete within 5–7 business days from receipt of quality-acceptable samples. Complex matrices such as FFPE tissue, low-input clinical specimens, or large sample batches may require additional processing time. Contact us to discuss turnaround expectations for your specific sample type and volume.

Do you provide method transfer support?

Yes. We deliver comprehensive dPCR services method transfer packages including validation protocols, acceptance criteria, and technical support for establishing equivalent performance at sponsor or manufacturing laboratories.

Can you help us convert an existing qPCR assay to a dPCR platform?

Yes. We have significant experience in optimizing existing qPCR assays for multiple dPCR platforms and can help you maximize the advantages of digital PCR for your use case.

What is hyperwelling and when is it used?

Hyperwelling is an advanced dPCR technique that increases the effective number of partitions per reaction, dramatically improving sensitivity beyond standard digital PCR performance. At Accelevir, we apply hyperwelling for applications requiring detection of extremely rare targets — such as HIV reservoir quantification, ultra-low vector copy detection in biodistribution studies, and minimal residual disease monitoring — where standard dPCR sensitivity approaches may not be sufficient. This capability enables reliable detection of targets present at frequencies as low as one in one million molecules in complex clinical matrices.

Partner With Us

Ready to develop and validate your dPCR assay with a regulatory-ready CRO

Accelevir’s scientific team is prepared to discuss your clinical program requirements and design a digital PCR service strategy aligned with your regulatory pathway.

Accelevir | © 2023